As far as I can remember these issues have been persistent since VC 3 and FL 8.5
First off, whenever i hit play on the FL transport, it will automatically turn the audio input (on any channel in VC as far as I can tell) from any setting to off. It will do this in a brand new project so I know it has nothing to do with initialized controls. The really strange thing is, I tried this without VC, and without even the usb plugged in, and midi sync turned off on the midi output that was hooked into my virus and it still did it.. major WTF.
It also does the exact same thing with the lfo offset amount on the unison settings.
Also I'd say that the VC is in sync for about 2/3 of the time.
I'm very frustrated, what is going on here?